Search Results for "Hui-Yi Lin"

Hui-Yi Lin named Program Director of Biostatistics

Hui-Yi Lin, Ph.D., MS has been named Director of the Biostatistics Program at the Louisiana State University Health Sciences (LSUHSC) School of Public Health. She is a Professor of Biostatistics at LSUHSC and also serves as the Director of the Biostatistics & Bioinformatics Core at the Center for Translational Viral Oncology (CTVO), and as Co-Director of the Data Analytical Unit of the LSUHSC-NO Comprehensive Alcohol-HIV/AIDS Research Center (CARC). Her extensive background in genetic statistics, machine learning, and statistical applications in public health, cancer, and medical-related fields makes her a perfect fit for the Director’s role at LSUHSC. Her primary research interest is developing novel statistical methods for genetic studies. In addition to her work at LSUHSC, she actively participates in many projects in the international prostate cancer genome consortium.

Currently, she is PI for a multiple-year Department of Defense (DoD) grant for developing genetic risk scores for prostate cancer. She is also a Co-Investigator for several NIH grants. She has ~180 peer-review publications in high-impact journals. Furthermore, Dr. Lin has profound working experience working for ~50 NIH grants at 2 NCI-designated comprehensive cancer centers: Moffitt Cancer Center and Research Institute and Comprehensive Cancer Center at the University of Alabama at Birmingham (UAB). Check her full CV HERE.


Hui-Yi Lin

Curriculum Vitae: HLIN1.CV.PDF

Study Finds Flushing Water Lines Protects Inconsistently and May Increase Lead Exposure

Research conducted by LSU Health New Orleans School of Public Health finds that the current recommendations for running water to flush out lead are not consistently effective and may not be the best way to protect children from lead in drinking water. The findings are published in the International Journal of Environmental Research and Public Health available online here.

“While flushing taps according to prevailing guidelines (for 30 seconds to 2 minutes) may reduce water lead levels for some homes, over half the tested homes had peak water lead levels after that time, so these recommendations may inadvertently increase exposures,” notes study leader Adrienne Katner, DEnv, Assistant Research Professor of Environmental & Occupational Health Sciences at LSU Health New Orleans School of Public Health. “More effective interventions like certified water filters should be considered instead, particularly when replacing water service lines and plumbing is not economically possible.”

The research team surveyed homeowners and tested water samples from 376 New Orleans homes on the East Bank of the Mississippi River (the city’s water source) between February 2015 and November 2016. Recruited homes met criteria for the potential presence of lead. Virginia Tech colleagues analyzed the water samples, which were first cold water draws, first hot water draws, draws after letting the water run for 30 – 45 seconds, 2.5 – 3 minutes or 5.5 – 6 minutes.

Overall, New Orleans water lead levels were typically low compared to the EPA’s action level of 15 ppb. The analysis revealed a water lead level of 5 ppb in 88% of all samples from normal-use residential sites. More than half of all samples from normal use sites (60%) had detectable water lead levels of at least 1 ppb or higher. Water lead levels ranged from non-detectable (less than 1 ppb) to 58 ppb found in samples after flushing for 30-45 seconds. There was no significant difference in water lead level distribution after flushing for the various amounts of time until the six-minute mark after which the water lead level distribution decreased.

“While the percent of samples with water lead levels exceeding 1 ppb did decrease after extended flushing for 5.5 to 6 min, the reductions were not always substantial,” says Dr. Katner. “If the aim is to prevent childhood lead exposure altogether, preferably, or at least reduce it to the minimally detectable level (1 ppb) as recommended by the American Academy of Pediatricians, then New Orleans may require more proactive interventions than flushing to meet this goal. We could not verify that a one-time flush is sufficient to maintain low water lead levels. Some studies evaluating flushing at school taps suggest frequent flushes may be needed throughout the day, as waterborne lead can return to pre-flush levels within hours. Prolonged and repeated flushing may also not be practical, cost-effective, or sustainable over the long term, especially in cities with declining water resources and/or rising water rates.”

Katner and her colleagues conclude, “Public health messages should be modified to ensure appropriate application of flushing, while acknowledging its short-comings and practical limitations.”

In addition to Katner, the LSU Health New Orleans research team included Drs. Hui-Yi Lin, Chih-Yang Hu, as well as Komal Brown and Xinnan Wang. Researchers from Virginia Tech, Tulane University, and Corona Environmental Consulting also participated.The research was supported in part by the Louisiana Board of Regents’ New Research Pilot Funding Program, the National Science Foundation, LSU Health New Orleans School of Public Health and the National Institutes of Health.

Source


Biostatistics and Data Science students and faculty showcased their work at the Joint Statistical Meetings

The Biostatistics and Data Science program had a strong presence this year at the Joint Statistical Meetings (JSM) held in Portland, Oregon, between August 3 and 8, 2024. Several of our faculty and students delivered presentations on topics such as robust inference, large genomic studies, and time-dynamic statistical methods. Pictured from left to right are Drs. Julia Volaufova, Evrim Oral, Joonha Chang, Hui-Yi Lin, Lynn LaMotte, and PhD students Masuma Mannan and Nubaira Rizvi.


Consultation Services

Biostatistics
School of Public Health
2020 Gravier Street, 3rd Floor
New Orleans, LA 70112
Phone: (504) 568-5700
FAX: (504) 568-5701

Online Appointment Request

Biostatistical Consulting Center (BCC)   The Biostatistical Consulting Center at LSU Health Sciences Center offers comprehensive statistical consulting and data analysis services for clients within and outside the Health Sciences Center. Specific services offered include assistance in grant proposal preparation, design of clinical trials, experimental designs, survey design, determination of sample size requirements, randomization plans, data management, statistical modeling, data analysis, report writing, and interpretation.

Faculty members have extensive experience providing statistical support with NIH, NSF and private foundation grants. Their specializations include clinical trials, nonparametric and categorical data methods, survival analysis, design of experiments, cross-over trials, linear models, regression analysis and response surface methodology, multivariate methods, sampling methods, longitudinal data analysis and high-throughput genomic/metagenomics data methods.

Through the School of Public Health, the BCC has a wide array of computing hardware and statistical and computing software (SAS, SPSS, S-Plus, R, StatXact, STATA, WINBUGS, FORTRAN, C/C++, etc.). A comprehensive suite of data collection and management services as well as an extensive set of paper and online survey tools are available through our affiliation with the Epi Data Center within the School of Public Health.

Consultation provided as part of the preparation of a grant proposal is generally offered at no charge provided the statistician is to be supported by the grant. In general, we are willing to spend an hour on unfunded, but otherwise meritorious projects. However, we do not provide extended consultation or data analysis unless arrangements can be made to cover the cost of faculty/student time.

Where a meaningful intellectual contribution to the formulation of the research question or the analytical interpretation has been provided by the statistician or essential statistical analysis performed, it is expected that this faculty collaborator will be offered co-authorship on consequent publications and presentations.

Contact Information:

Hui-Yi Lin
Professor and Interim Director
Biostatistics Program, School of Public Health
LSU Health Sciences Center

2020 Gravier Street, 3rd Floor
New Orleans, LA 70112
hlin1@lsuhsc.edu
Phone: (504) 568-6083
FAX: (504) 568-5701

Biostatistics Online Appointment Request


Research

Dr. Hui-Yi Lin’s primary research interest is developing novel statistical methods for genetic studies and omics data analyses, especially interactions of genetic variants for cancers. She also works in big data analysis and machine learning fields. Moreover, Dr. Lin has profound statistical consultation experience with health professionals across multiple disciplines, such as basic science, health behavioral studies, epidemiology studies, and clinical trials. She serves as the Director of the Biostatistics & Bioinformatics Core at the Center for Translational Viral Oncology (CTVO) and as Co-Director of the Data Analytical Unit of the LSUHSC-NO Comprehensive Alcohol-HIV/AIDS Research Center (CARC) at LSUHSC. She is the Principal Investigator (PI) for a multiple-year Department of Defense (DoD) grant for developing polygenic risk scores (PRSs) for prostate cancer. She also served as PI for several NIH grants (such as R21) and as a Co-Investigator for several NIH grants. She has more than 175 peer-reviewed publications in high-impact journals. In addition to her work at LSUHSC, she actively participates in the international prostate cancer genome consortium. Dr. Lin also has extensive working experience at the 2 NCI-designated comprehensive cancer centers: Moffitt Cancer Center and Research Institute and Comprehensive Cancer Center at the University of Alabama at Birmingham (UAB).

# Keywords: Genetic Statistics In Cancers, Omic Data Analysis, Big Data Analysis, Machine Learning, and Clinical Trial  

Dr. Qingzhao Yu serves as the interim Associate Dean at the School of Public Health. Currently, she holds the role of Contact Principal Investigator for two significant NIH grants: An R01 project titled “Interactions between ES-miRNAs and environmental risk factors are responsible for TNBC progression and associated racial health disparities: a novel analysis with multilevel moderation inferences” and an R15 project titled “Trends of disparities in breast cancer progression and health care considering multilevel risk factors.” Dr. Yu has been the Principal Investigator, co-investigator, or biostatistician on numerous grants and projects. She has been authored in more than 130 peer-reviewed publications, one book, and four statistical software packages. Her research primarily focuses on advancing statistical methods for causal inferences and high-dimensional data analysis. These methodologies have found widespread application in uncovering mechanisms underlying observed health disparities, assessing interventions and health policies, as well as optimizing experimental designs. 

# Keywords: Bayesian Method, Machine Learning and Data Mining Techniques, Mediation Analysis, Optimal Experimental Designs, and Spatial Data Analysis.

Dr. Donald Mercante‘s research interests include design and analysis of experiments, multivariate permutation methods, and statistical models for correlated data. He is the principal investigator for the NIH-funded Data Management and Analysis Core for the LSU Superfund Research Center and the Co-Director of the Biostatistics and Epidemiology Research Design Core for the NIH-funded LaCATS Center grant at LSU-HSC. 

# Keywords: Clinical Trials, Study Design, Permutation Methods, and Correlated Data

Dr. Zhide Fang’s research interests include (1) developing novel statistical methodologies for analyzing high-throughput, large-scale genomic, epigenomic metagenomics data; (2)  developing efficient algorithms for Big Data; (3) developing methods and algorithms for constructing model-based experimental designs for the development of statistical theory.

# Keywords: Gene Expression, DNA Methylation, Microbiome, Big Data, and Machine Learning

Dr. Evrim Oral’s statistical methodology research involves several different areas. She specifically focuses on proposing robust estimation in generalized linear models (GLM) and survey sampling. She also develops novel estimators that utilize randomized response techniques (RRT) for sensitive topics. Her methodology research also includes proposing new estimation techniques and statistical tests for data subject to limit of detection (LOD). She does research on several other areas of survey sampling as well, such as ranked set sampling and assessing the effects of unit nonresponse and attrition in health-related studies. Her collaborative research interests are diverse. She has been working as a Co-investigator on several NIH-funded projects such as Quality of Life in Prostate Cancer Project (QPCaP) and The Women and Their Children’s Health (WaTCH). She worked for the LSU Health Care Services Division for many years and utilized big data from electronic health records (EHR) to improve LSU patients’ outcomes. She has been providing statistical consulting and supporting research in many departments and schools of LSUHSC, such as OB/GYN, Otolaryngology, Emergency Department, and School of Nursing. She is currently doing research with the Comprehensive Alcohol-HIV/AIDS Research Center (CARC) researchers and evaluating the effects of alcohol use in people with HIV.

# Keywords: Generalized Linear Models, Robust Statistics, Survey Methodology, Surveying Sensitive Topics, and Level of Detection

Dr. Anand Paul’s research interests are centered on the development of advanced mathematical and statistical models for Artificial Intelligence (AI) and Machine Learning (ML) systems. A key focus of my work is on exploring and formulating novel machine learning algorithms, utilizing techniques such as Markov Decision Processes and Hidden Markov Models to develop robust intelligence and knowledge discovery frameworks. Through these efforts, I aim to enhance the performance, reliability, and interpretability of AI systems.  I have experience in working with intelligent agents (reinforcement learning), using attention mechanisms in Natural Language Processing, and feature selections and dimensionality reduction techniques. My current research is focused on developing efficient mathematical models for gradient descent in ML systems, and Bayesian frame for selective quantization. Through these endeavors, I continuously seek to bridge theoretical advancements with practical applications, contributing to the evolution of resilient and intelligent AI systems. In LSUHSC I have started to work with Orthopedic data to provide insight into various intersections of AI with healthcare, aiming to improve diagnostic accuracy and patient outcomes.

# Keywords: Evolving Intelligence, Machine Learning, Mathematical Modeling, Statistical Analysis, Knowledge Discovery

Dr. Joonha Chang focuses on the methodological development of advanced algorithms. His specialties include latent class clustering, non-homogeneous continuous-time Markov chains, optimization, and signal processing algorithms. Dr. Chang aims to develop and refine methodologies to advance medical research and healthcare. His research projects include: (1) Latent classification of multi-modal non-homogeneous continuous-time Markov chains, (2) Integer programming formulation for clinical scheduling, and (3) Signal processing mobile typing patterns to passively detect intoxication.

# Keywords: Latent Class Clustering, Markov Chain, Integer Programming, Optimization, Signal Processing

Dr. Siyi Chen’s research focuses on developing causal inference techniques (e.g. Mendelian Randomization) to identify biomarkers that reveal the genetic basis of diseases (such as Alzheimer’s Disease). In bioinformatics, I am interested in integrating multi-omics data. Meanwhile, I also collaborate with investigators from various disciplines to amplify the impact of my work.

# Keywords: Causal Inference, Alzheimer’s Disease, Multi-omics, and Bioinformatics


Research Projects

Dr. Hui-Yi Lin’s primary research interest is developing novel statistical methods for genetic studies and omics data analyses, especially interactions of genetic variants for cancers. She also works in big data analysis and machine learning fields. Moreover, Dr. Lin has profound statistical consultation experience with health professionals across multiple disciplines, such as basic science, health behavioral studies, epidemiology studies, and clinical trials. She serves as the Director of the Biostatistics & Bioinformatics Core at the Center for Translational Viral Oncology (CTVO) and as Co-Director of the Data Analytical Unit of the LSUHSC-NO Comprehensive Alcohol-HIV/AIDS Research Center (CARC) at LSUHSC. She is the Principal Investigator (PI) for a multiple-year Department of Defense (DoD) grant for developing polygenic risk scores (PRSs) for prostate cancer. She also served as PI for several NIH grants (such as R21) and as a Co-Investigator for several NIH grants. She has more than 175 peer-reviewed publications in high-impact journals. In addition to her work at LSUHSC, she actively participates in the international prostate cancer genome consortium. Dr. Lin also has extensive working experience at the 2 NCI-designated comprehensive cancer centers: Moffitt Cancer Center and Research Institute and Comprehensive Cancer Center at the University of Alabama at Birmingham (UAB).

# Key words: Genetic Statistics In Cancers, Omic Data Analysis, Big Data Analysis, Machine Learning, and Clinical Trial 

Dr. Qingzhao Yu serves as the interim Associate Dean at the School of Public Health. Currently, she holds the role of Contact Principal Investigator for two significant NIH grants: An R01 project titled “Interactions between ES-miRNAs and environmental risk factors are responsible for TNBC progression and associated racial health disparities: a novel analysis with multilevel moderation inferences” and an R15 project titled “Trends of disparities in breast cancer progression and health care considering multilevel risk factors.” Dr. Yu has been the Principal Investigator, co-Investigator, or biostatistician on numerous grants and projects. She has been authored in more than 130 peer-reviewed publications, one book, and four statistical software packages. Her research primarily focuses on advancing statistical methods for causal inferences and high-dimensional data analysis. These methodologies have found widespread application in uncovering mechanisms underlying observed health disparities, assessing interventions and health policies, as well as optimizing experimental designs. 

# Key words: Bayesian Method, Machine Learning and Data Mining Techniques, Mediation Analysis, Optimal Experimental Designs, and Spatial Data Analysis.

Dr. Donald Mercante‘s research interests include design and analysis of experiments, multivariate permutation methods, and statistical models for correlated data. He is the principal investigator for the NIH-funded Data Management and Analysis Core for the LSU Superfund Research Center and the Co-Director of the Biostatistics and Epidemiology Research Design Core for the NIH-funded LaCATS Center grant at LSU-HSC. 

# Keywords: Clinical Trials, Study Design, Permutation Methods, and Correlated Data

Dr. Zhide Fang’s research interests include (1) developing novel statistical methodologies for analyzing high-throughput, large-scale genomic, epigenomic metagenomics data; (2)  developing efficient algorithms for Big Data; (3) developing methods and algorithms for constructing model-based experimental designs for the development of statistical theory.

# Key words: Gene Expression, DNA Methylation, Microbiome, Big Data, and Machine Learning

Dr. Evrim Oral’s statistical methodology research involves several different areas. She specifically focuses on proposing robust estimation in generalized linear models (GLM) and survey sampling. She also develops novel estimators that utilize randomized response techniques (RRT) for sensitive topics. Her methodology research also includes proposing new estimation techniques and statistical tests for data subject to limit of detection (LOD). She does research on several other areas of survey sampling as well, such as ranked set sampling and assessing the effects of unit nonresponse and attrition in health-related studies. Her collaborative research interests are diverse. She has been working as a Co-investigator on several NIH-funded projects such as Quality of Life in Prostate Cancer Project (QPCaP) and The Women and Their Children’s Health (WaTCH). She worked for the LSU Health Care Services Division for many years and utilized big data from electronic health records (EHR) to improve LSU patients’ outcomes. She has been providing statistical consulting and supporting research in many departments and schools of LSUHSC, such as OB/GYN, Otolaryngology, Emergency Department, and School of Nursing. She is currently doing research with the Comprehensive Alcohol-HIV/AIDS Research Center (CARC) researchers and evaluating the effects of alcohol use in people with HIV.

# Keywords: Generalized Linear Models, Robust Statistics, Survey Methodology, Surveying Sensitive Topics, and Level of Detection


Biostatistics & Data Science (BSDS)

MPH
MS
PhD
Research
Careers
Faculty
Students
Consultation Services

The Biostatistics and Data Science program at our School of Public Health has a clear educational mission: to train students in statistical, computational, and data science methods and to equip them with the skills to tackle intricate challenges within public health and biomedical research. Designed for Ph.D. students, our curriculum is designed to foster a profound comprehension of statistical theory and data science methods. Additionally, we emphasize the practical applications of biostatistics and data science in public health research and practice for MS, MPH, and Ph.D. students.

By completing our program, graduates acquire a diverse skill set to design and conduct research and clinical studies, analyze complex datasets, interpret results, and effectively communicate findings to various audiences, including researchers, policymakers, and the general public. Additionally, our graduates contribute to the formulation of policies and guidelines concerning the utilization of data in healthcare and public health. Our program prepares students for a wide range of career opportunities. Over the years, our graduates have secured positions in local and federal government entities, such as the Department of Education of Louisiana, prestigious research institutes like the National Institutes of Health, universities, hospitals, and industries, including insurance companies and pharmaceutical firms.

Furthermore, our program is actively involved in research endeavors and community outreach initiatives aimed at advancing the field of biostatistics and data science while striving to improve public health outcomes. We advance health and disease understanding by developing and applying statistical methods and data science techniques. We also collaborate with researchers from diverse disciplines, assisting them in extracting meaningful insights from complex datasets and developing novel statistical methodologies for emerging areas in biomedicine. Notably, our faculty members lead biostatistics centers/cores such as the Comprehensive Alcohol-HIV/AIDS Research Center, Center for Translational Viral Oncology, LSU Superfund Data Management and Analysis Core, and Louisiana Clinical and Translational Science Center. Additionally, our faculty members secure external research funding as Principal Investigators for esteemed programs like the National Institutes of Health (NIH) and the Department of Defense (DoD) for developing and applying new statistical methods for breast cancer and prostate cancer.

Overall, the primary mission of our Biostatistics and Data Science Program is to enhance human health through rigorous statistical analysis and data interpretation. We achieve this by conducting cutting-edge research and fostering collaborations contributing to ongoing progress. Ultimately, our work positively impacts public health and biomedical fields.

Program contact:

Hui-Yi Lin, PhD
Interim Program Director and Professor
Phone: 504-568-6083; Email: hlin1@lsuhsc.edu


Impact of Dietary Quality on Genital Oncogenic HPV Infection in Women

Hui-Yi Lin, Qiufan Fu, Tung-sung Tseng, Xiaodan Zhu, Krzysztof Reiss, L Joseph Su, Michael E Hagensee

Background
Most cervical cancers are directly linked to oncogenic or high-risk human papillomavirus (HR-HPV) infection. This study evaluates associations between diet quality and genital HPV infection in women.

Methods
This study included 10,543 women from the 2003–2016 National Health and Nutrition Examination Survey. The outcome was the genital HPV infection status (HPV-negative, low-risk [LR] HPV, and HR-HPV). Dietary quality was evaluated using the Healthy Eating Index (HEI), with which a higher score indicates a better diet quality.

Results
Women who are not consuming total fruits (15.8%), whole fruits (27.5%), or green vegetables and beans (43%) had a significantly higher risk of HR-HPV infection than women who complied with the Dietary Guidelines for Americans (HR-HPV OR = 1.76, 1.63 and 1.48 for a HEI score of 0 vs. 5) after adjusting confounding factors. Similar results of these food components on LR-HPV infection were shown. In addition, intake of whole grains and dairy was inversely associated with LR-HPV infection.

Read the full article HERE.


Spring 2019

Spring 2019

Speaker: Daniel Fort, PhD
Affiliation: Ochsner Health System, Center for Applied Health Services Research, New Orleans-LA
Title: Unsupervised Learning: Clustering
Date and Time: January 28, 2019, 3:00 pm
Room: LEC, Room 303 

Speaker: Peter F Thall, PhD
Affiliation: Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX
Title: Statistical Remedies for Flawed Conventions in Medical Research
Date and Time: February 11, 2019, 3:00 pm
Room: LEC, Room 303

Speaker: Chuck Huber, PhD
Affiliation: StataCorp and Texas A&M School of Public Health
Title: Casual Inference for Complex Observational Data
Date and Time: February 18, 2019, 3:00 pm
Room: LEC, Room 303

Speaker: Angela Stodghill, PhD
Affiliation: Janssen R & D (Johnson & Johnson), Raritan-NJ
Title: Responsibilities and Required Skills of Clinical Statisticians in Clinical Trials Processes
Date and Time: March 15, 2019, 10.00 am
Room: LEC, Room 303

Speaker: Michelle Lacey, PhD
Affiliation: Tulane University, Department of Mathematics, New Orleans-LA
Title: Modeling Methylation Patterns with Long Read Sequencing Data
Date and Time: March 18, 2019, 3:00 pm
Room: LEC, Room 303

Speaker: Hui-Yi Lin, PhD
Affiliation: LSUHSC, School of Public Health, Biostatistics Program, New Orleans-LA
Title: Impact of Interaction patterns on genetic association studies: an example of prostate cancer
Date and Time: April 1, 2019, 3:00 pm
Room: LEC, Room 303

Speaker: Christian Geneus, MS, MPH
Affiliation: Tulane School of Public Health and Tropical Medicine, Department of Global Biostatistics and Data Science, New Orleans-LA
Title: Quantifying Uncertainty in Model Predictions: Stages of the Network Modeling
Date and Time: April 8, 2019, 3:00 pm
Room: LEC, Room 303

Speaker: Tat Yau, MSc
Affiliation: Louisiana State University Health Sciences Center, Biostatistics Program, New Orleans-LA
Title: Inference in Linear Multivariate Envelope Model
Date and Time: April 10, 2019, 2:00 pm
Room: MEB, Room S3 (3212)

Speaker: Yaling Li
Affiliation: Louisiana State University Health Sciences Center, Biostatistics Program, New Orleans-LA
Title: A Simulation Study to Check the Consequences of Violating Assumptions in Mediation Analysis
Date and Time: April 18, 2019, 8:30 am
Room: MEB, Room S7 (3224)

Speaker: Sungsu Kim, PhD
Affiliation: University of Louisiana at Lafayette, Department of Mathematics, Lafayette-LA
Title: A Multivariate Circular Distribution with Applications to the Protein Structure Prediction Problem
Date and Time: April 22, 2019, 3:00 pm
Room: LEC, Room 303

Speaker: Huaizhen Qin, PhD
Affiliation: University of Florida, Department of Epidemiology, Gainesville-Florida
Title: Rare Variant Association Mapping in Admixed Populations
Date and Time: April 29, 2019, 3:00 pm
Room: LEC, Room 303

Organizer: Evrim Oral, PhD